Welcome
About
Hi! My name is Artem, I'm currently a PhD student at Heidelberg University, working on the intersection of AI and computational biology under the supervision of Moritz Gerstung. My current work is focused on using large-scale medical datasets to establish transformer-based models of disease risk prediction based on medical history. Previously I was working on image-based models for subtyping tumours of the central nervous system and designing Bayesian generative models for spatial transcriptomics data. In the previous life I was a chemist.
More broadly, I'm interested in the common points between AI and biology - both ways - developing biology-inspired AI and using AI to build data-driven simulations of biological processes. I'm fascinated by complex systems and their emergent properties, such as evolution, repair and self-organization.
When not doing research, I enjoy astrophotography, scuba diving, reading science fiction, japanese 🐾 nyaa~! ✨ animation 🐾 nyaa~! ✨ .
Recent Publications
Learning the natural history of human disease with generative transformers
Shmatko, A., Jung, A.W., Gaurav, K., Brunak, S., Mortensen, L.H., Birney, E., Fitzgerald, T., Gerstung, M.
Nature • 2025 • DOI: 10.1038/s41586-025-09529-3